rs32090585 SNP Detail

Summary

• ID
  rs32090585
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23592614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAACTGCTG AAATAAGCTA CCTCATATTA TAGCATCTCC
  AAACAGAATG AGAAGGGTAC AGAGACTGGA ACTTGTCTGT AGACTAGGAG GTGACTTTAT
  W
  ATCTTTCCTA TAGTCAAAAT CTGCACTCTC TGCTCCATGA TGCCTCTGAA TCCACTTGAG
  GGGCAGTGAT GGTCCCTCCT CGGCCACTAC CACGTACCCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47624655	NES10279454	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32090585					SNP	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624655	NES10279454	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23592614 () rs orientation: forward

Symbol	Name	Function Class
4930580E04Rik	RIKEN cDNA 4930580E04 gene	within coordinates
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15578	CpG island 15578	403 bp distal
D5Jcs54	DNA segment, Chr 5, John C. Schimenti 54	1917 bp proximal
Gm43058	predicted gene 43058	4 bp downstream
Rr112207	regulatory region 112207	587 bp proximal
Rr124896	regulatory region 124896	213 bp distal
Rr367795	regulatory region 367795	281 bp downstream
Tssr45359	transcription start site region 45359	347 bp downstream
Tssr45360	transcription start site region 45360	319 bp downstream
Tssr45361	transcription start site region 45361	299 bp downstream
Tssr50259	transcription start site region 50259	1117 bp upstream
Tssr50260	transcription start site region 50260	692 bp upstream
Tssr50261	transcription start site region 50261	600 bp upstream
Tssr50262	transcription start site region 50262	555 bp upstream