rs32091437 SNP Detail

Summary

• ID
  rs32091437
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23591664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGGGATAGTC CCTAGAAAAG TAGATACCTG CGCTAATTTA
  AATGTTTAAC AGGAATGCAG GTGCAGATGA ACAAAAGGTA GTTTCCATTA GGTAGAAATG
  K
  TTTTTTTTTC CACTTCCTGT TTCTAGTCTC TTTTTCAGTG TTCCTGTACG AAACCACGGA
  GTTTCAGAAG CAGATGAAAT CTATCAGCGG CCTGCCCCAA G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47624667	NES10279450	PERLEGEN	MM_PANEL2	f	SNP		G		G	T	T	G
ss148055956	ENSMUSSNP5686870	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs32091437					SNP	G	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624667	NES10279450	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23591664 () rs orientation: forward

Symbol	Name	Function Class
4930580E04Rik	RIKEN cDNA 4930580E04 gene	443 bp upstream
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15578	CpG island 15578	267 bp proximal
Gm43058	predicted gene 43058	954 bp downstream
Rr112206	regulatory region 112206	1064 bp distal
Rr112207	regulatory region 112207	1537 bp proximal
Rr124896	regulatory region 124896	within coordinates
Rr367795	regulatory region 367795	219 bp upstream
Tssr45359	transcription start site region 45359	595 bp upstream
Tssr45360	transcription start site region 45360	607 bp upstream
Tssr45361	transcription start site region 45361	634 bp upstream
Tssr50259	transcription start site region 50259	167 bp upstream
Tssr50260	transcription start site region 50260	219 bp downstream
Tssr50261	transcription start site region 50261	318 bp downstream
Tssr50262	transcription start site region 50262	367 bp downstream