rs32091440 SNP Detail

Summary

• ID
  rs32091440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23591054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTA CATCTCAGTT CCTTACTATT
  Y
  GGGAGCTACT CAACAATTAC ACTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47624670	NES10279480	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		C	T	T	C		T
ss321488666	CHEV_5_22891874	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32091440					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624670	NES10279480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23591054 () rs orientation: forward

Symbol	Name	Function Class
4930580E04Rik	RIKEN cDNA 4930580E04 gene	1053 bp upstream
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15578	CpG island 15578	877 bp proximal
Gm43058	predicted gene 43058	1564 bp downstream
Rr112206	regulatory region 112206	454 bp distal
Rr124896	regulatory region 124896	346 bp proximal
Rr367795	regulatory region 367795	829 bp upstream
Tssr45359	transcription start site region 45359	1205 bp upstream
Tssr45360	transcription start site region 45360	1217 bp upstream
Tssr45361	transcription start site region 45361	1244 bp upstream
Tssr50259	transcription start site region 50259	419 bp downstream
Tssr50260	transcription start site region 50260	829 bp downstream
Tssr50261	transcription start site region 50261	928 bp downstream
Tssr50262	transcription start site region 50262	977 bp downstream