rs32091443 SNP Detail

Summary

• ID
  rs32091443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23590975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG GTGCACTCGG ACATACATCT
  Y
  CCAACCGTCA TCATCTTACT CCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47624673	NES10279479	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	C	C	C	C		T	C	C	T		C
ss148055941	ENSMUSSNP6894117	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss321488665	CHEV_5_22891795	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32091443					SNP	C	C	T	C	C	C	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624673	NES10279479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23590975 () rs orientation: forward

Symbol	Name	Function Class
4930580E04Rik	RIKEN cDNA 4930580E04 gene	1132 bp upstream
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15578	CpG island 15578	956 bp proximal
Gm43058	predicted gene 43058	1643 bp downstream
Rr112206	regulatory region 112206	375 bp distal
Rr124896	regulatory region 124896	425 bp proximal
Rr367795	regulatory region 367795	908 bp upstream
Tssr45359	transcription start site region 45359	1284 bp upstream
Tssr45360	transcription start site region 45360	1296 bp upstream
Tssr45361	transcription start site region 45361	1323 bp upstream
Tssr50259	transcription start site region 50259	498 bp downstream
Tssr50260	transcription start site region 50260	908 bp downstream
Tssr50261	transcription start site region 50261	1007 bp downstream
Tssr50262	transcription start site region 50262	1056 bp downstream