rs32092216 SNP Detail

Summary

• ID
  rs32092216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23624658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAACCCA CATTAAGGTC
  ATGTGGACCA TGGAGTCAAT CTTATAAAAA ACCTTCTCAA CCTATGTAAA AGCTAAGTCT
  CCAACTCCTC ATACTTCCTG AGAGCCGGGG CTGCAGTGAT TTCCCACTAT GCCTAGATTT
  TCTATTAGGA CTATTTTTCA ATTGTGGCTG GGTTCACAGA CTTCTACCCT AACTTTTGCT
  R
  GGGATTGAGC CCAGTGCTTT CCCAGAGCTA CGCCTCACTC AGCCCCTAAC CCCTCCCCTT
  CCCTCAGTAC TAAGAATCAA ACGTGCTGGA ACTGACGAAG ACTACATTTC AACTCAAGGC
  AGGTGATCTC CTATGTTTGA GGCCAGTCTA GTCTATAAAG CAAGTTCCAG GCCAGCCACT
  GAGAACTTGT CCTCTAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47624415	NES10278185	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32092216					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624415	NES10278185	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23624658 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15579	CpG island 15579	940 bp distal
Gm57286	predicted gene, 57286	1066 bp upstream
Gm72704	predicted gene, 72704	504 bp downstream
Rr608096	regulatory region 608096	1351 bp distal
Rr608097	regulatory region 608097	1337 bp distal
Rr608098	regulatory region 608098	1136 bp distal
Rr608099	regulatory region 608099	576 bp distal
Tssr45362	transcription start site region 45362	1010 bp downstream
Tssr50265	transcription start site region 50265	1103 bp upstream