rs32092222 SNP Detail

Summary

• ID
  rs32092222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23622352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGTG GGTTTGGTGT CCTGCAGAGA
  Y
  TTGTAGACAG CAAGTGTAAA GAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47624421	NES10278311	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T	T	C	C	C		T	C	T		C
ss148057271	ENSMUSSNP6756497	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
ss321488924	CHEV_5_22923172	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32092222					SNP	C	C	T	C	C	T	T	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624421	NES10278311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23622352 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15579	CpG island 15579	896 bp proximal
Gm57286	predicted gene, 57286	within coordinates
Gm72704	predicted gene, 72704	945 bp upstream
Rr608093	regulatory region 608093	1952 bp distal
Rr608094	regulatory region 608094	820 bp distal
Rr608095	regulatory region 608095	1387 bp distal
Rr608096	regulatory region 608096	455 bp proximal
Rr608097	regulatory region 608097	948 bp proximal
Rr608098	regulatory region 608098	956 bp proximal
Rr608099	regulatory region 608099	1171 bp proximal
Tssr45362	transcription start site region 45362	1255 bp upstream
Tssr50265	transcription start site region 50265	1160 bp downstream