rs32092457 SNP Detail

Summary

• ID
  rs32092457
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190794107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTGGATGA GATCAGACTT AACCAATATC CCCCCACTAG
  GATTTCCAGC TGCCCACCTG CCCACTCTGA TCCCAAACCT TTTCTCGTCT CAGCAAAGGC
  M
  ATCACCATCT TCCTTACAGG AAGCACAAAC TGAAATCTAA GTCATGCTCG ATTTCTTCCT
  CCCCTTGCTG TTCTTATCCA AGGCATGCAT GTACTGTTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45105168	mCV23580496	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss146501350	ENSMUSSNP5948144	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
ss320194659	CHEV_1_192885789	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32092457					SNP	C	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190794107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1216	CpG island 1216	689 bp proximal
Nsl1	NSL1, MIS12 kinetochore complex component	603 bp upstream
Rr29190	regulatory region 29190	93 bp proximal
Rr396711	regulatory region 396711	962 bp upstream
Tatdn3	TatD DNase domain containing 3	within coordinates
Tssr10722	transcription start site region 10722	1091 bp upstream
Tssr15751	transcription start site region 15751	966 bp downstream
Tssr15752	transcription start site region 15752	986 bp downstream