rs32093366 SNP Detail

Summary

• ID
  rs32093366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95159218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGTGAG TTTATTGTAC
  TTTCTTACTT ACAGAGCACA GTGACCCCAA AGCAGCTACA CTGGAAAGTC TCCACCCAGC
  ATGGACGATG GCTTGATGGC TTCCCCAGAG CTGTATAGGT GGAGCCTTCC CCTCTAGTTC
  TCCCCAGCCT ATATACTCTT GCCCTGTCTA GAGGCCTCAT GCAATTAGGG CAGAATTGCA
  Y
  ACAAGTGACT GGGAGGAGTG GCCAGAAACT CAGGAGAGGG TCTAATGTCC TAGTCTCATG
  AAGATGGCAG CATCTGAGCT CATAGGATAC CTTCATAACA CAGACCGAAC ACAGGGTAAC
  TCTGGGGAAA TGGTTCTCTC AGAACCCTTA TTGGCAGGCC TGTTTCCACA ACAGGCATGG
  AACTGGGTTT CCGATCCGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47624867	NES11428616	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs32093366					SNP	C	C	C	C	C	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624867	NES11428616	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95159218 () rs orientation: forward

Symbol	Name	Function Class
9330175E14Rik	RIKEN cDNA 9330175E14 gene	537 bp downstream
Cpgi20846	CpG island 20846	1281 bp proximal
Nlrc5	NLR family, CARD domain containing 5	1766 bp upstream
Rr401062	regulatory region 401062	1592 bp upstream
Rr667981	regulatory region 667981	1127 bp proximal
Rr667982	regulatory region 667982	1597 bp proximal
Rr667983	regulatory region 667983	1812 bp proximal
Tssr78863	transcription start site region 78863	1753 bp upstream
Tssr78864	transcription start site region 78864	1788 bp upstream
Tssr82495	transcription start site region 82495	1552 bp downstream
Tssr82496	transcription start site region 82496	1669 bp downstream