rs32093550 SNP Detail

Summary

• ID
  rs32093550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:92900300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGCTGCA CAGCCAAAGC
  CGGAACTGTC AGGGAACTGA AGCCCCCTGG CCCTGAACCA AATCCCGGCA CAGGAAAGCC
  AGGCTGTTTC TTACAGGAAA CCCCATCCAG CGAATGCCCA CTGCTGCCAG TGCCTGTGCG
  CACCCCGGAG ACGCATCAGA CAACCAGCAA AACCAGGCCC ATTGGACTTC ACAGATCTCT
  Y
  CTGGTGCAGC CGGTTCGGAA CCTTGTGGAG TTGGCTGCCT GCCCGGTGCG GATGGATCAC
  TTGGGTCTGG GTCTGGGGTC TGGGGTCTGG GGTCTGGGTC TGTCTGGGTC TGGGTTGGTT
  GGTTGCCTCC ACACTTGGAC ATTTCTGGTG CAGGAGTTCA TGAGCTCACA GGTACAGTCC
  CTGAAAACTA CATTGCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48123710	NES12140110	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32093550					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48123710	NES12140110	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:92900300 () rs orientation: forward

Symbol	Name	Function Class
Gm30085	predicted gene, 30085	within coordinates
Gm62083	predicted gene, 62083	within coordinates
Rr391110	regulatory region 391110	within coordinates
Rr508114	regulatory region 508114	521 bp distal
Rr508115	regulatory region 508115	370 bp distal
Rr508116	regulatory region 508116	231 bp distal
Rr508117	regulatory region 508117	8 bp distal
Rr508118	regulatory region 508118	within coordinates
Rr508119	regulatory region 508119	1009 bp proximal
Tssr132761	transcription start site region 132761	201 bp downstream