rs32094917 SNP Detail

Summary

• ID
  rs32094917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95159819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACACATAA TGGTTGGGAG
  AATATGGGGT GAGCCTTACT GTTGGGCTGT AACTCTTCTC ACACTAACAG ATGACAGCCC
  ACCATGTACC ACAGGCTGGG ACTCCACCAT GTGACAATAG GAAACGGAGG CTGGCTAAAA
  ACAAGGCATC TATTTGTAAG AGGCGAGCCA GGTAAGGTTG GGAAAGCTAA GAGTCACACA
  Y
  AAGTAATCAG TCAAAATAAT AATGACTCCC CCCCACACAC ACTCTTGCCT GTCAAGAACT
  TTCTAGATTT CCGGCTCGGT CCCGGGAGGG AGGAGGTTAG AAGGTCACAG GAATTTGAGA
  TCCAAAGAAG GGGACTAACG TAGAAGGATT TCTTAAGAGT TTTGGGCACA CAGCACATCT
  GCTCTAACTT CTTCTGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47624888	NES11428623	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs32094917					SNP	T	T	T	T	T	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624888	NES11428623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95159819 () rs orientation: forward

Symbol	Name	Function Class
9330175E14Rik	RIKEN cDNA 9330175E14 gene	within coordinates
Cpgi20846	CpG island 20846	680 bp proximal
Nlrc5	NLR family, CARD domain containing 5	1165 bp upstream
Rr401062	regulatory region 401062	991 bp upstream
Rr667981	regulatory region 667981	526 bp proximal
Rr667982	regulatory region 667982	996 bp proximal
Rr667983	regulatory region 667983	1211 bp proximal
Tssr78863	transcription start site region 78863	1152 bp upstream
Tssr78864	transcription start site region 78864	1187 bp upstream
Tssr78865	transcription start site region 78865	1532 bp upstream
Tssr82495	transcription start site region 82495	951 bp downstream
Tssr82496	transcription start site region 82496	1068 bp downstream