rs32094920 SNP Detail

Summary

• ID
  rs32094920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95159958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGGCAT CTATTTGTAA
  GAGGCGAGCC AGGTAAGGTT GGGAAAGCTA AGAGTCACAC ATAAGTAATC AGTCAAAATA
  ATAATGACTC CCCCCCACAC ACACTCTTGC CTGTCAAGAA CTTTCTAGAT TTCCGGCTCG
  GTCCCGGGAG GGAGGAGGTT AGAAGGTCAC AGGAATTTGA GATCCAAAGA AGGGGACTAA
  Y
  GTAGAAGGAT TTCTTAAGAG TTTTGGGCAC ACAGCACATC TGCTCTAACT TCTTCTGAAG
  GAATTGGAAG GTGCTCCTTC TCTGGTCCTC AGGACAGATG ACAGAACTGA AACTCAGAGT
  CAAGACTTTT GTCTAGGGCA GTGTTTCTCA ATCTGGGGGA CCCAACCTCT GCCAAGTCAA
  ATGATTTCAT TATGATTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
ss47624891	NES11428624	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
rs32094920					SNP	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624891	NES11428624	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95159958 () rs orientation: forward

Symbol	Name	Function Class
9330175E14Rik	RIKEN cDNA 9330175E14 gene	within coordinates
Cpgi20846	CpG island 20846	541 bp proximal
Nlrc5	NLR family, CARD domain containing 5	1026 bp upstream
Rr401062	regulatory region 401062	852 bp upstream
Rr667981	regulatory region 667981	387 bp proximal
Rr667982	regulatory region 667982	857 bp proximal
Rr667983	regulatory region 667983	1072 bp proximal
Tssr78863	transcription start site region 78863	1013 bp upstream
Tssr78864	transcription start site region 78864	1048 bp upstream
Tssr78865	transcription start site region 78865	1393 bp upstream
Tssr82495	transcription start site region 82495	812 bp downstream
Tssr82496	transcription start site region 82496	929 bp downstream