rs32096603 SNP Detail

Summary

• ID
  rs32096603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95160879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTCAGGT GATGAGCCGC
  TGTCGCCACT GGACCCTGGA CCCAACTCCA CGAAGTTTTG CTCAGTGGCT CCTCCTGCCT
  TCATCCTACA TCGTCTCTGG GAAGTGTAGA AAGAAGGGTT GTGCGGGTCC TGCTGCGCTC
  TGGCCCCACC CACTTCCTGG CAGATGCCCA CCTTACCCAG TCTCAGTAGT CAGAGAGGCA
  Y
  GTCCCGCTGC GATCTCCAAG CCGCGGCGGG TTCCGGGCAC GCTACTCGCG CGCCCTGGGG
  CTGGCACTTT GAATCCACGT GATTTCTCGG CAGCGGCAGT AGAGTCTATG AACTAGCGAA
  CAGCGCCCGC TCAGTGGCCA CTTTCAGTTT CCACAGAGCG CGGTGGAGAG GGAGCTGAAC
  TGGTGAGTTA CCTGCCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47624915	NES11428551	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32096603					SNP	T	T	T	T	T	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624915	NES11428551	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95160879 () rs orientation: forward

Symbol	Name	Function Class
9330175E14Rik	RIKEN cDNA 9330175E14 gene	within coordinates
Cpgi20846	CpG island 20846	within coordinates
Nlrc5	NLR family, CARD domain containing 5	105 bp upstream
Rr401062	regulatory region 401062	within coordinates
Rr667981	regulatory region 667981	65 bp distal
Rr667982	regulatory region 667982	within coordinates
Rr667983	regulatory region 667983	151 bp proximal
Tssr78863	transcription start site region 78863	92 bp upstream
Tssr78864	transcription start site region 78864	127 bp upstream
Tssr78865	transcription start site region 78865	472 bp upstream
Tssr82495	transcription start site region 82495	81 bp upstream
Tssr82496	transcription start site region 82496	8 bp downstream