rs32097418 SNP Detail

Summary

• ID
  rs32097418
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42299841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA ATTACTGGCA AACCCAAATA
  K
  GGGGGATGAA TCTGGGCTGT TTCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45105770	mCV25452429	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss149000244	ENSMUSSNP754185	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
ss319701925	CHEV_1_42317526	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32097418					SNP	G	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42299841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi200	CpG island 200	1275 bp proximal
Gm28175	predicted gene 28175	within coordinates
Gm70195	predicted gene, 70195	1634 bp downstream
Rr410203	regulatory region 410203	1712 bp distal
Rr410204	regulatory region 410204	866 bp distal
Rr410205	regulatory region 410205	within coordinates
Rr410206	regulatory region 410206	992 bp proximal
Rr410207	regulatory region 410207	1258 bp proximal
Tssr6506	transcription start site region 6506	871 bp downstream
Tssr6507	transcription start site region 6507	1242 bp upstream