rs32097555 SNP Detail

Summary

• ID
  rs32097555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95162122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACAGAAA AGGTATTTTG
  AAAATTGACC TTCATGATTG GGGGAAAAGG CTAGAAAATG ACCAAAGGTG GGTGTAGCTG
  AGCCATACCT GCAGCTTTCT CTTCCTGAAT CGCTTTCTTG CAAAGAAAGG AAACCCGGAA
  ACCTGCCAGG TTCCCTCTGG GATGTAGCTC AGAGACAGGG CAGACCCTGG TTTGAGTCCC
  Y
  GGCGCCACAA AAATAAGGCA CCAGGCCTGA GCTCCCACCA GAGAACAGAG TGGGCGGGAG
  TGACTGGAAG TTCATAAGGC CCCTCATGGT GTACTGTCCA CAGACCAGCA CCAGCAATTA
  TGCCTTGCCT GCCCTGCCTC CAGGACCAGC GCCCATCTGT CTTGGAATAG GACCTCTGGG
  TGCTCTCAAT ACTGTGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47624918	NES11428552	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32097555					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624918	NES11428552	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95162122 () rs orientation: forward

Symbol	Name	Function Class
9330175E14Rik	RIKEN cDNA 9330175E14 gene	391 bp upstream
Cpgi20846	CpG island 20846	913 bp distal
Nlrc5	NLR family, CARD domain containing 5	within coordinates
Rr401062	regulatory region 401062	1012 bp downstream
Rr667981	regulatory region 667981	1308 bp distal
Rr667982	regulatory region 667982	1093 bp distal
Rr667983	regulatory region 667983	794 bp distal
Tssr78863	transcription start site region 78863	1140 bp downstream
Tssr78864	transcription start site region 78864	1091 bp downstream
Tssr78865	transcription start site region 78865	750 bp downstream
Tssr82495	transcription start site region 82495	1324 bp upstream
Tssr82496	transcription start site region 82496	1197 bp upstream