rs32097558 SNP Detail

Summary

• ID
  rs32097558
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95162218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTTCCT GAATCGCTTT
  CTTGCAAAGA AAGGAAACCC GGAAACCTGC CAGGTTCCCT CTGGGATGTA GCTCAGAGAC
  AGGGCAGACC CTGGTTTGAG TCCCCGGCGC CACAAAAATA AGGCACCAGG CCTGAGCTCC
  CACCAGAGAA CAGAGTGGGC GGGAGTGACT GGAAGTTCAT AAGGCCCCTC ATGGTGTACT
  K
  TCCACAGACC AGCACCAGCA ATTATGCCTT GCCTGCCCTG CCTCCAGGAC CAGCGCCCAT
  CTGTCTTGGA ATAGGACCTC TGGGTGCTCT CAATACTGTG CATCATGACC ATGAGTTACG
  ATTTCAGATC TTGGAAGGTT GGTTCCCCAT CTATAGTACA GACATTATGT TCAAAATTTA
  TCTCCTGAAT CGAGTGAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47624921	NES11428553	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32097558					SNP	G	G	G	G	G	T	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624921	NES11428553	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95162218 () rs orientation: forward

Symbol	Name	Function Class
9330175E14Rik	RIKEN cDNA 9330175E14 gene	487 bp upstream
Cpgi20846	CpG island 20846	1009 bp distal
Nlrc5	NLR family, CARD domain containing 5	within coordinates
Rr401062	regulatory region 401062	1108 bp downstream
Rr667981	regulatory region 667981	1404 bp distal
Rr667982	regulatory region 667982	1189 bp distal
Rr667983	regulatory region 667983	890 bp distal
Tssr78863	transcription start site region 78863	1236 bp downstream
Tssr78864	transcription start site region 78864	1187 bp downstream
Tssr78865	transcription start site region 78865	846 bp downstream
Tssr82495	transcription start site region 82495	1420 bp upstream
Tssr82496	transcription start site region 82496	1293 bp upstream