rs32098771 SNP Detail

Summary

• ID
  rs32098771
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191196812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGCAGA GTTTAACTCC
  ATGCAGAACA CATATATGCA CGGATTAGCT CAAAAAGAGT GGTTAGACCC TGAGGCCTTT
  TAACTGCAGT AGGTAAAGAA GAGGGGAAGA AAGGCATTTA TAGAAAGCTA ACTGCTTAGA
  AAGACAAATG GATTGTTTAG GAGAAACAAA CAAGTCTGTG CCATTTCTCC CCATAATTCT
  W
  TGTGGCCTAG CTTGTTGCTC CAGATTAAAC AACAGAGAGA CCAGTTCTGG AAAGCAGAGT
  TGATATAAGA ACAGCAGAAG AGTACAAGAT ACACTCTGTT CTGCATCAGC CTACATCCAA
  GGAGGCTAGG GTGGAGGGTG AGCTTTTAAA GGCAAGAAAG GAGTCCATGT AAGCTGTTTT
  GAAGCAATGA ACATGGTTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45106994	mCV23929928	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		T
ss49546298	NES12906324	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A		A	T	T		A	T	T	T		T
ss146506654	ENSMUSSNP4862976	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							T
ss320195430	CHEV_1_193288494	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32098771					SNP	T	A	A	A	A	A	A	A	A	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49546298	NES12906324	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191196812 () rs orientation: forward

Symbol	Name	Function Class
Gm32200	predicted gene, 32200	within coordinates
Tssr15794	transcription start site region 15794	708 bp downstream