rs32099783 SNP Detail

Summary

• ID
  rs32099783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150869953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAATGG AAGGAGATAG
  GGGGAAAGTA AGAGACATCA CAAAGTCCCT AGCTGTGCTG TGGAACTGGG AAAGGAAACT
  GGGTATCAAT AAAACATTGA CGTCCAATAG AAAGAGCAGT GTTTGTCTGT CTGTCTGTCT
  GTCTGTTTGT TTGTTTGTTT GTTTTTAAAG AAAGAAAAGA AAAGGGGAGG GGAGGGGAAG
  R
  GAGGGGAGAA AAAATTCTGG GGGAGTTGAA ATTTCGTTAT CAAGATTCAC TTTGCTGATC
  AGCCTAAATC CTCTGCGAAG CATGGTGATG CGATAGTATT CCCATTTCAC ATACCCTCCA
  GTACAACTAT GTGTCACGTC TCAGGCAAAG ATCCACTGAA ATGTTGTTCC TCTCAATGAC
  ATTTTCCTGC CAAAACTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45106332	mCV25101056	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss145712193	ENSMUSSNP4850920	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs32099783					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150869953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	409 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	767 bp upstream
Rr420192	regulatory region 420192	1563 bp distal
Rr420193	regulatory region 420193	661 bp distal
Rr420194	regulatory region 420194	322 bp distal
Rr420195	regulatory region 420195	208 bp distal
Rr420196	regulatory region 420196	301 bp proximal
Tssr14167	transcription start site region 14167	1047 bp upstream
Tssr14168	transcription start site region 14168	753 bp upstream