rs32100981 SNP Detail

Summary

• ID
  rs32100981
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98810951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCTTGTTA TCCCTACCAT
  GCTGAAAATA GTTCAACAGG GCATTAAACA GGGCAACACA CACGGAGGGC ACTAAACAGG
  GCAACGCACA CAGTGGGTAC TAAACCGAGC AACACACACC GTGGCCATTC AACAGACCAA
  CTCACGATGG GCATTAAACA GGGCAACGCA CACAGTGGAC ATTTAAAAAA CAACAAAAAA
  M
  CCCCACTTGA ACGGATTTGT ACTGAGTTCT CATCAGCTGT AGTACCGCAC TGTGAGATCA
  TCTCACAAAA GACAGAGCAT ACAGAACCAA GCCCAAACCG GGTGAGGCTG TGCGGCTGCC
  TGTGGGTCAT TCGGTACCGG CTCGCGCCAG AACCCGTTGA AGCTCCAGCC GCGAGACCAG
  CCTGAGAACT AAAACCCTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45606883	mCV24976449	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss147092609	ENSMUSSNP7227011	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32100981					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98810951 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	28 bp proximal
Rr398351	regulatory region 398351	497 bp upstream
Rr595805	regulatory region 595805	395 bp distal
Rr595806	regulatory region 595806	606 bp proximal
Rr595807	regulatory region 595807	896 bp proximal
Rr595808	regulatory region 595808	1176 bp proximal
Tssr37901	transcription start site region 37901	214 bp upstream
Tssr37902	transcription start site region 37902	945 bp upstream
Tssr37903	transcription start site region 37903	1010 bp upstream
Tssr37904	transcription start site region 37904	1037 bp upstream
Tssr37905	transcription start site region 37905	1101 bp upstream
Tssr37906	transcription start site region 37906	1131 bp upstream
Tssr37907	transcription start site region 37907	1194 bp upstream
Usp1	ubiquitin specific peptidase 1	1096 bp upstream