rs32102010 SNP Detail

Summary

• ID
  rs32102010
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60059061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGACTTAG AGAGATACCA
  AAAAAAAAAA AATGTGTATA ATACTGGGTT ATTGGAATTG GGAGGGTACT CACCATTTTT
  GATTTTGCTT TCCAAGTCAG GTTTCAAAGA GTTTAACGAG ACAGCACCAC CACTTGCCTG
  AAGAGAGCAG GCTGGAAGTC AGCATACTGT CCAATCACAG CAAGTTGAAG AAAAACAACA
  S
  TTGAGGGGCA GCCAGAATTT TGTTCAAATC ATGGCACCAT TACCACTATA GTAAGTCATC
  CAATCTGGAC AGGAACTTGA AAACATTTTA TTAAGAAGTC TATTGCAATG GGAAGAGGGG
  AGAATCATCC CACAAAGATT CTTAAAGCTT AAATCACAAA TGTTTCATGG AAAGGATGGG
  CGAGCAAAAT TTTATACATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss39362302	mCV27552956	ABI	CRAMUS_MOUSE	f	SNP	C	C	G					G
ss52559995	NES15632519	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G		G	G	C	G	G	G	G
ss147991271	ENSMUSSNP5597052	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32102010					SNP	C	C	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52559995	NES15632519	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60059061 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	within coordinates
Rr502965	regulatory region 502965	156 bp proximal
Tssr4605	transcription start site region 4605	3 bp upstream
Tssr134460	transcription start site region 134460	315 bp upstream
Tssr134461	transcription start site region 134461	181 bp upstream
Tssr134462	transcription start site region 134462	79 bp upstream
Tssr134463	transcription start site region 134463	29 bp upstream
Tssr134464	transcription start site region 134464	56 bp downstream
Tssr134465	transcription start site region 134465	110 bp downstream
Tssr134466	transcription start site region 134466	123 bp downstream
Tssr134467	transcription start site region 134467	159 bp downstream
Tssr134468	transcription start site region 134468	186 bp downstream
Tssr134469	transcription start site region 134469	217 bp downstream