rs32104609 SNP Detail

Summary

• ID
  rs32104609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103253251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT GTTGGAGTTG CCAGGTCTCA
  Y
  TCCCCAAGTC TCAGGCTCTT AGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39363427	mCV23154255	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss148500006	ENSMUSSNP851195	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
ss325087097	CHEV_15_103175255	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32104609					SNP	C	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103253251 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	within coordinates
Rr510620	regulatory region 510620	1790 bp distal
Rr510622	regulatory region 510622	1215 bp distal
Tssr136772	transcription start site region 136772	250 bp upstream
Tssr136773	transcription start site region 136773	168 bp upstream
Tssr136774	transcription start site region 136774	100 bp upstream
Tssr136775	transcription start site region 136775	57 bp upstream
Tssr136776	transcription start site region 136776	35 bp upstream
Tssr136777	transcription start site region 136777	within coordinates