rs32104824 SNP Detail

Summary

• ID
  rs32104824
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171974335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGTAATC TGGAATCCTA GAATCCTGGT TAGGTTTCCT
  TTAGGTGTCA GCAGAAAGTA GTGTACAGAG GTTACCTAAA ACCAGCAACC TGCAGAGTTA
  W
  GTGGCGTATC CATGTTTTAG CTGTATTTTC ACAACAGCTA AATTATGAAT AAACCTAGAT
  ATTTATCAAC AGATGAATGA ATTAAAGAAA ATATAGAAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45107385	mCV23114275	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss120006860	PARCsnp_1.17508	PARC_SEQ	INBRED	f	SNP		T	A
ss120009734	PARCsnp_1.07134	PARC_SEQ	INBRED	f	SNP		T	A
ss146182851	ENSMUSSNP807546	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320122953	CHEV_1_174076899	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32104824					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171974335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1037	CpG island 1037	1069 bp proximal
Dcaf8	DDB1 and CUL4 associated factor 8	1239 bp upstream
Gm10171	predicted gene 10171	1867 bp upstream
Gm70088	predicted gene, 70088	961 bp downstream
Rr372457	regulatory region 372457	524 bp upstream
Rr423469	regulatory region 423469	403 bp proximal
Rr423470	regulatory region 423470	1209 bp proximal
Rr423471	regulatory region 423471	1421 bp proximal
Tssr10170	transcription start site region 10170	1269 bp upstream
Tssr10171	transcription start site region 10171	1290 bp upstream
Tssr10172	transcription start site region 10172	1330 bp upstream
Tssr10173	transcription start site region 10173	1342 bp upstream
Tssr15148	transcription start site region 15148	1155 bp downstream