rs32108979 SNP Detail

Summary

• ID
  rs32108979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134072414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC TGAACTTTTC AGCCCAGGGG
  R
  CTAAACAACT TCTCCCCCAA GAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45608337	mCV22575293	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147526027	ENSMUSSNP4645135	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321346966	CHEV_4_133901018	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32108979					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134072414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	1315 bp distal
Rr601645	regulatory region 601645	1384 bp distal
Rr601646	regulatory region 601646	275 bp distal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	within coordinates
Tssr39548	transcription start site region 39548	1949 bp downstream
Tssr39549	transcription start site region 39549	1892 bp downstream
Tssr39550	transcription start site region 39550	1597 bp downstream
Tssr39551	transcription start site region 39551	1568 bp downstream
Tssr39552	transcription start site region 39552	1495 bp downstream
Tssr39553	transcription start site region 39553	1423 bp downstream
Tssr39554	transcription start site region 39554	1399 bp downstream
Tssr39555	transcription start site region 39555	1194 bp downstream
Tssr39556	transcription start site region 39556	1079 bp downstream