rs32109489 SNP Detail

Summary

• ID
  rs32109489
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112416733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGCTAAT GACAGACAGG
  GGGTCAGAGG ACTTGTGTTC GGGCAAGGGC AGGACTTAGG GTGAAACGCC CACTGTGCCT
  CTCCTTGCGG AGGATGTAGA CGGTGGGGAT CCTACTCCTT CCACTTCTGA TGAGGGCTCA
  CTTCATTTGA TGGGTGAGAG CAGCACAAAG GTAAACTGAG GTCCACAATG GCTCAGCTTT
  K
  GGGTTACCTG ACACTGGATA GTGCTTACAG GAGCCACAGA GACTCACTGT AATAGAAGGG
  ACACCCAGGA GCTCGAGTCT CATGTATTGG ATTCTGTTCT TGGGAGTAGG AGGGGGAAGA
  GAATGTCACC AGGGTGTTGG GGGGAGGGGA GAGTGCAGCC TCACCATCTC CCGTGGGTGT
  GGACTGACTG CCTACAGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366277548	MGP_WTSI_5_112697887	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs32109489					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366277548	MGP_WTSI_5_112697887	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112416733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16256	CpG island 16256	405 bp proximal
Crybb1	crystallin, beta B1	within coordinates
Gm46941	predicted gene, 46941	1854 bp downstream
Rr617313	regulatory region 617313	1697 bp proximal
Tssr47978	transcription start site region 47978	1342 bp downstream
Tssr47979	transcription start site region 47979	1310 bp downstream
Tssr47980	transcription start site region 47980	443 bp upstream
Tssr47981	transcription start site region 47981	590 bp upstream
Tssr47982	transcription start site region 47982	607 bp upstream
Tssr47983	transcription start site region 47983	621 bp upstream
Tssr47984	transcription start site region 47984	630 bp upstream
Tssr47985	transcription start site region 47985	641 bp upstream
Tssr52559	transcription start site region 52559	1505 bp upstream
Tssr52560	transcription start site region 52560	1466 bp upstream
Tssr52561	transcription start site region 52561	618 bp downstream
Tssr52562	transcription start site region 52562	662 bp downstream