rs32110378 SNP Detail

Summary

• ID
  rs32110378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112419059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC TGCTTCGTGA AGCGTGAAGC
  R
  CGGGGAAGCT ATATTCTAGG CAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45772243	mCV24791761	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss149079783	ENSMUSSNP3643553	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss321645168	CHEV_5_112700213	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32110378					SNP	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112419059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16256	CpG island 16256	1660 bp distal
Cpgi16257	CpG island 16257	within coordinates
Crybb1	crystallin, beta B1	1608 bp downstream
Gm46941	predicted gene, 46941	within coordinates
Rr399259	regulatory region 399259	1772 bp upstream
Rr617313	regulatory region 617313	within coordinates
Rr617314	regulatory region 617314	196 bp proximal
Rr617315	regulatory region 617315	1638 bp proximal
Tssr47980	transcription start site region 47980	1875 bp downstream
Tssr47981	transcription start site region 47981	1729 bp downstream
Tssr47982	transcription start site region 47982	1711 bp downstream
Tssr47983	transcription start site region 47983	1697 bp downstream
Tssr47984	transcription start site region 47984	1687 bp downstream
Tssr47985	transcription start site region 47985	1648 bp downstream
Tssr52561	transcription start site region 52561	1676 bp upstream
Tssr52562	transcription start site region 52562	1642 bp upstream