rs32111970 SNP Detail

Summary

• ID
  rs32111970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:153425388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG TCCCAAAGCT ACCCTGCCCA
  R
  CGTACCTGAC TTCACTCCTC TGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45107369	mCV23521082	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss145744828	ENSMUSSNP183009	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32111970					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153425388 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
F630010C12Rik	RIKEN cDNA F630010C12 gene			within coordinates
Npl	N-acetylneuraminate pyruvate lyase			Intron
				Splice-Site
Rr420696	regulatory region 420696			1666 bp distal
Rr420697	regulatory region 420697			within coordinates
Rr420698	regulatory region 420698			393 bp proximal
Rr420699	regulatory region 420699			1249 bp proximal
Rr420700	regulatory region 420700			1335 bp proximal
Tssr14276	transcription start site region 14276			55 bp downstream
Tssr14277	transcription start site region 14277			92 bp downstream
Tssr14278	transcription start site region 14278			176 bp downstream
Tssr14279	transcription start site region 14279			196 bp downstream
Tssr14280	transcription start site region 14280			403 bp downstream