rs32115316 SNP Detail

Summary

• ID
  rs32115316
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154936352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCTCTCCA TTCGAAAGAA ATGCAGGTCA GCTTCCAAAC
  ATTGACATCC TGCTTGGGCT AAAGAGATGG CACGTTTGTT GTCTTCCCCC CCTCCCCACT
  K
  TTTAGACAGA GACCCATGTA CCTCAGTTTG ACCTTGAATT TACTGTGTAG CTGAGAATGA
  CCTTGAACTT CGATCCTCCT CTCTCCACAC CTCAGATGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45108065	mCV24610402	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss145774530	ENSMUSSNP6735038	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32115316					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154936352 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	719 bp distal
Gm41980	predicted gene, 41980	272 bp upstream
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	1014 bp upstream
Rr396410	regulatory region 396410	747 bp downstream
Tssr248	transcription start site region 248	1076 bp upstream
Tssr9521	transcription start site region 9521	896 bp downstream
Tssr9522	transcription start site region 9522	660 bp downstream
Tssr9523	transcription start site region 9523	1695 bp upstream
Tssr14331	transcription start site region 14331	1061 bp upstream
Tssr14332	transcription start site region 14332	1049 bp upstream
Tssr14333	transcription start site region 14333	1031 bp upstream