rs32116045 SNP Detail

Summary

• ID
  rs32116045
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178163211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT ACATCCCCCA AGTACTGAGA
  R
  GTTTCAACTC GTAAATATTA CCAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45107777	mCV22887831	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss146354945	ENSMUSSNP3742951	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32116045					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178163211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	683 bp proximal
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	within coordinates
Rr29068	regulatory region 29068	within coordinates
Rr372516	regulatory region 372516	1416 bp upstream
Tssr316	transcription start site region 316	1423 bp downstream
Tssr317	transcription start site region 317	1941 bp downstream
Tssr10384	transcription start site region 10384	260 bp upstream
Tssr10385	transcription start site region 10385	457 bp upstream
Tssr10386	transcription start site region 10386	563 bp upstream
Tssr10387	transcription start site region 10387	1436 bp upstream
Tssr10388	transcription start site region 10388	1646 bp upstream
Tssr15478	transcription start site region 15478	1995 bp upstream
Tssr15479	transcription start site region 15479	1680 bp upstream
Tssr15480	transcription start site region 15480	1081 bp upstream
Tssr15481	transcription start site region 15481	422 bp downstream
Tssr15482	transcription start site region 15482	499 bp downstream
Tssr15483	transcription start site region 15483	751 bp downstream
Tssr15484	transcription start site region 15484	1454 bp downstream
Tssr15485	transcription start site region 15485	1513 bp downstream
Tssr15486	transcription start site region 15486	1594 bp downstream
Tssr15487	transcription start site region 15487	1645 bp downstream