rs32116451 SNP Detail

Summary

• ID
  rs32116451
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156193345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC CAGGGGCGGT CTAGTGGTTC
  W
  ACCTCACTTC AGAGAAGATG TAAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45609031	mCV22851771	ABI	CRAMUS_MOUSE	f	SNP		A	A					T
ss46787952	NES10985242	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	T	A		A	A	T		A	T	A		A
ss321445489	CHEV_4_155482997	CHEVERUD	SCREENING_POP	f	SNP												A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32116451					SNP	A	A	A	A	A	T	A	T	A	A	T	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46787952	NES10985242	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156193345 () rs orientation: forward

Symbol	Name	Function Class
9430015G10Rik	RIKEN cDNA 9430015G10 gene	1110 bp upstream
Cpgi15500	CpG island 15500	741 bp proximal
Gm69135	predicted gene, 69135	within coordinates
Rr398931	regulatory region 398931	852 bp upstream
Tssr40790	transcription start site region 40790	1083 bp upstream
Tssr40791	transcription start site region 40791	1125 bp upstream