rs32116758 SNP Detail

Summary

• ID
  rs32116758
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155926348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC GAGCGCCGCG CCTATGGGCC
  R
  CCCTTCCTGC GTGATCGCGT GTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45609226	mCV24238774	ABI	CRAMUS_MOUSE	f	SNP		G	G					A	G
ss46784484	NES10993773	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G		G	A		A	G	G		G
ss148117693	ENSMUSSNP2223172	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss321443289	CHEV_4_155216000	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32116758					SNP	G	G	G	G	G	A	G	A	G	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784484	NES10993773	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155926348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	within coordinates
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	1713 bp upstream
Rr398927	regulatory region 398927	407 bp downstream
Rr606590	regulatory region 606590	1223 bp distal
Rr606591	regulatory region 606591	786 bp distal
Rr606592	regulatory region 606592	280 bp distal
Rr606593	regulatory region 606593	723 bp distal
Tssr40729	transcription start site region 40729	783 bp downstream
Tssr40730	transcription start site region 40730	753 bp downstream
Tssr40731	transcription start site region 40731	724 bp downstream
Tssr40732	transcription start site region 40732	716 bp downstream
Tssr40733	transcription start site region 40733	415 bp downstream
Tssr40734	transcription start site region 40734	1160 bp upstream
Tssr44980	transcription start site region 44980	836 bp upstream
Tssr44981	transcription start site region 44981	787 bp upstream