rs32118042 SNP Detail

Summary

• ID
  rs32118042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109835871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACTTAGG TCAAGTCTTG
  GGCCTCAGTC TTTTTATCTG TGAAGTAAAG AAATAGAACG CTGAATGAGG TGGCTTACAC
  CTGTAATGCC AGAGGTGGAG GCAGCAGGGT TGCTATGAGT TTAAGGTCTG CACAGCAAGA
  CCCAGACTCA AATTCAAACT CAAACCAAAC CAAATCAGAA AGAGTGGACT TTAAAATGAT
  Y
  GTCACTATTA AAATATTAAG AGTTGCTGGG TAGTGGTGGC GCATGCCTTT AATCCCAGCA
  CCAAAAAAAC AAAAAAAAAA AAAAGAGTTT TACTATTAAG AACTCATTCG GCTGTTATTG
  AAAGCATTGT AGATATTGGT CAGCATGTAC TGTGGGTATG TAGTGAGGGT GAGATACTGG
  CACTGTTCTC AGAATGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47128333	NES11591209	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T		T	T	C	T		T
ss322395320	CHEV_7_117380178	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32118042					SNP	C	C	C	C	C	C	T	C	C	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47128333	NES11591209	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109835871 () rs orientation: forward

Symbol	Name	Function Class
Swap70	SWA-70 protein	within coordinates
Tssr68496	transcription start site region 68496	1075 bp upstream
Tssr68497	transcription start site region 68497	1214 bp upstream