rs32118443 SNP Detail

Summary

• ID
  rs32118443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153063765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATT GCTGGCATAA ATAAGTCTGG
  Y
  ATACATAGTA GTCCTTTTAA CATTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45108796	mCV23323805	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss145737885	ENSMUSSNP2933408	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32118443					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153063765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	1552 bp distal
Lamc2	laminin, gamma 2	1572 bp upstream
Rr13130	regulatory region 13130	565 bp distal
Rr25076	regulatory region 25076	227 bp proximal
Rr28719	regulatory region 28719	1364 bp distal
Tssr14250	transcription start site region 14250	1963 bp upstream
Tssr14251	transcription start site region 14251	1927 bp upstream
Tssr14252	transcription start site region 14252	1897 bp upstream
Tssr14253	transcription start site region 14253	1883 bp upstream
Tssr14254	transcription start site region 14254	1864 bp upstream