rs32119058 SNP Detail

Summary

• ID
  rs32119058
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98810667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTATCCA AGCATCCTGT
  CCTCATTTCC AACACCAAGC TTCTAAAGCT CCCGGTGCTA TGGACACGTG TGATGTGCAG
  CTCATCTTCT CCCACAAATG GACCTCCCCT CCATGCCATT CAAAGTACAC TTCCTGGAAC
  TGTCTGCTGA AACGTCAGTC TTCATTATCC CATCGAAACG ACCAAACGGT TACCTTTTTA
  W
  AAAAAATCTA CCATTTACAC TATTTCAAAT CACCAGTTTA ATTTCGGTCT TCAGTAGACT
  GTAGATCATG GAGTACATTC CCTTCGCTTG TTATCCCTAC CATGCTGAAA ATAGTTCAAC
  AGGGCATTAA ACAGGGCAAC ACACACGGAG GGCACTAAAC AGGGCAACGC ACACAGTGGG
  TACTAAACCG AGCAACACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45609075	mCV24976448	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss147092604	ENSMUSSNP2638689	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32119058					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98810667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	312 bp proximal
Rr398351	regulatory region 398351	781 bp upstream
Rr595805	regulatory region 595805	111 bp distal
Rr595806	regulatory region 595806	890 bp proximal
Rr595807	regulatory region 595807	1180 bp proximal
Rr595808	regulatory region 595808	1460 bp proximal
Tssr37901	transcription start site region 37901	498 bp upstream
Tssr37902	transcription start site region 37902	1229 bp upstream
Tssr37903	transcription start site region 37903	1294 bp upstream
Tssr37904	transcription start site region 37904	1321 bp upstream
Tssr37905	transcription start site region 37905	1385 bp upstream
Tssr37906	transcription start site region 37906	1415 bp upstream
Tssr37907	transcription start site region 37907	1478 bp upstream
Usp1	ubiquitin specific peptidase 1	1380 bp upstream