rs32121778 SNP Detail

Summary

• ID
  rs32121778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45014306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGTGGGC ATAAAGTGAG
  CCCTTTTTGT AATTGGTCAA GTGCTAGTAA TTGAAGCCTG GCCTTTGTGC ATGTGAGGTA
  AGTGCTCTGC CCCAGCAACA ACCCCAGCCC CTGTAGCTAG AAATATAGGG CATGTCTGAG
  GAGAGGCCTG AGAGCAGAGA ATGGCTTAGG CATGTTGTCT AGATATTGGT AAAGACCAAA
  R
  AAGAAAAAGA AGGAAGGGGA AGAGGAGAAG AATAAATAGA AGAAAAAGAG GATGAAGAGG
  AGGAGGAAAA ATGTAGACAA CATAGTGAGT TCTAATCCAG CCTGGGACGC ATGGCAAAAT
  CCTGCCACTG GGGATGGGAA AGGAGCAAGT AAAAAAAAAG ACATGCTTAG AAGTTAGTTC
  ATGGCCTTGA AGTGGATCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46107732	mCV25290998	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss149134061	ENSMUSSNP6162019	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32121778					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45014306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	1161 bp proximal
Mtag2	metastasis associated gene 2	1279 bp upstream
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	within coordinates
Rr646418	regulatory region 646418	1641 bp distal
Rr646419	regulatory region 646419	814 bp proximal
Rr646420	regulatory region 646420	1136 bp proximal
Rr646421	regulatory region 646421	1822 bp proximal
Tssr72376	transcription start site region 72376	1886 bp downstream