rs32122397 SNP Detail

Summary

• ID
  rs32122397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136507010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tacataaaa tatataaatc ttttaaaagg
  agaaaaGAAA AAAAAAAAAA AAAGGAAGAT GTCCAAGTCC GAGGGGAGAG AAAAAGGCAC
  TTGGGGAGTT TGTCCCTTAG TAAGGATACA GATGGTCAAT TCCATTCCCA TTTCTGCTTT
  Y
  CAGGTGGCTT CTAAGATAGC AAAGAAAGTT AGGTTCAGTC AGTTATAACC TGTAGTTGTT
  CCGGGTGATT CACAAACCAG GCATTTTCTG AGAGAAGCCG GCTCCTGCTG GCAAACCTGA
  GGACAATCCT TTCCCCGGGG CAGATGTTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45109500	mCV23236756	ABI	CRAMUS_MOUSE	f	SNP						C		T
ss49503739	NES12860599	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C	T	C	C		C	C	T	C		C
ss145558973	ENSMUSSNP1879068	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss319996192	CHEV_1_138475849	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32122397					SNP	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49503739	NES12860599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136507010 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm33994	predicted gene, 33994	within coordinates
Gm57131	predicted gene, 57131	within coordinates
Rr367011	regulatory region 367011	232 bp upstream
Rr419471	regulatory region 419471	809 bp distal
Rr419472	regulatory region 419472	71 bp proximal
Rr419473	regulatory region 419473	195 bp proximal
Tssr9072	transcription start site region 9072	368 bp upstream
Tssr9073	transcription start site region 9073	394 bp upstream
Tssr13942	transcription start site region 13942	1257 bp downstream
Tssr13943	transcription start site region 13943	1282 bp downstream
Tssr13944	transcription start site region 13944	1309 bp downstream