rs32122411 SNP Detail

Summary

• ID
  rs32122411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18999135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGTAGCG TGTTTGCCCA
  GCTTGCTGGC CCGGGCCCTT GGTTGAATCC ACAGTACTAT AAAAGAAGAT AGGTTGATAG
  GTGAGTAGTA CCATGTAGTG AACAGATAGG CAGGCCACAC ACAGGAAGAG GCAGAAAAGA
  GATAAAGTAG GGTCCATAAG GCTTGAGCTG GCGACCAGAG AGCTTGCTCG AGGTCCTGGG
  Y
  TCAGCCTCTA CAGCCTTAAT CAAAAGTGGA TACAGGCCGA CTAGAAAGGA CAGAGCTGCC
  AGGACTAGCA GACGGCCCGG GAGTGAGCCG AGAACAGCCT CTGCCTGGCC TTAGTTTCCC
  TATCTCTACC ACCTCTCCAC CCCCACCTCA GGTCAGATAA GAAGGGCGGA GTGTGAGGGC
  AGATCCCAGG GCCCTGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46108136	mCV25048900	ABI	CRAMUS_MOUSE	f	SNP	T		C	C	C
ss148471789	ENSMUSSNP5468451	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32122411					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18999135 () rs orientation: forward

Symbol	Name	Function Class
Tssr64812	transcription start site region 64812	1086 bp upstream
Tssr70883	transcription start site region 70883	727 bp upstream
Tssr70884	transcription start site region 70884	382 bp upstream
Tssr70885	transcription start site region 70885	779 bp downstream
Tssr70886	transcription start site region 70886	1332 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates