rs32122481 SNP Detail

Summary

• ID
  rs32122481
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45014622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCCTGC CACTGGGGAT
  GGGAAAGGAG CAAGTAAAAA AAAAGACATG CTTAGAAGTT AGTTCATGGC CTTGAAGTGG
  ATCACATGCC TTGGTGAGGA CGGAACAGGC ACATCATCTG GAAATGTTCT GGAACTTAGG
  ATCTTGAACA TAACACAGGG AAAGGACACA TTTTTAACTA GAAGTGCAGA AAGACAGCTG
  S
  CTGGTTCCAA ATAACCTCGT GAACCTTGAT CCCAAAACAC ACCTGGAGGA AAGGATGGCT
  GTTTGGTACT TGGAGTATGA GACATCAGAT ATTACCATAT GGGTCTCTAG AGGCAATGAG
  ATGCCAGAAA TATCCAGCTT TGGGGGAGAG GAGACTCTGC AAGTCTAGCA CCTGAGATGA
  TAGAGCAGAT GATAAGTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46108043	mCV25291009	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss149134071	ENSMUSSNP6885496	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32122481					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45014622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	845 bp proximal
Mtag2	metastasis associated gene 2	963 bp upstream
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	within coordinates
Rr400310	regulatory region 400310	1745 bp upstream
Rr646418	regulatory region 646418	1957 bp distal
Rr646419	regulatory region 646419	498 bp proximal
Rr646420	regulatory region 646420	820 bp proximal
Rr646421	regulatory region 646421	1506 bp proximal
Tssr72376	transcription start site region 72376	1570 bp downstream