rs32123399 SNP Detail

Summary

• ID
  rs32123399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153364149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG GTCTATGTTT AAGGAAGGCC
  R
  GGGCAACATA ATGAGATCCT GTCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45109514	mCV25366617	ABI	CRAMUS_MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs32123399					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153364149 () rs orientation: forward

Symbol	Name	Function Class
Cpgi867	CpG island 867	508 bp distal
Dhx9	DExH-box helicase 9	743 bp upstream
Rr396394	regulatory region 396394	582 bp downstream
Rr396395	regulatory region 396395	695 bp upstream
Rr420682	regulatory region 420682	806 bp distal
Rr420684	regulatory region 420684	868 bp distal
Rr420685	regulatory region 420685	253 bp distal
Rr420686	regulatory region 420686	517 bp proximal
Tssr9459	transcription start site region 9459	1482 bp downstream
Tssr9460	transcription start site region 9460	580 bp downstream
Tssr14270	transcription start site region 14270	741 bp upstream
Tssr14271	transcription start site region 14271	722 bp upstream
Tssr14272	transcription start site region 14272	713 bp upstream