rs32125361 SNP Detail

Summary

• ID
  rs32125361
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170472218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA CGCTGCTGCG GCTTGCCCTC
  R
  TCGAGCCGGC GCCCTCCTCT GCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45109537	mCV23618299	ABI	CRAMUS_MOUSE	f	SNP		A	A				G		G
ss49529727	NES12826939	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A		G	G	A	A		G	G	G	A		G
ss146140299	ENSMUSSNP3307534	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss320111992	CHEV_1_172574780	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32125361					SNP	A	A	A	G	G	A	G	G	G	A	A	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49529727	NES12826939	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170472218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	within coordinates
Olfml2b	olfactomedin-like 2B	within coordinates
Rr28935	regulatory region 28935	within coordinates
Tssr280	transcription start site region 280	298 bp upstream
Tssr9927	transcription start site region 9927	1798 bp downstream
Tssr9928	transcription start site region 9928	191 bp downstream
Tssr9929	transcription start site region 9929	135 bp downstream
Tssr9930	transcription start site region 9930	79 bp downstream
Tssr9931	transcription start site region 9931	63 bp downstream
Tssr9932	transcription start site region 9932	47 bp downstream
Tssr9933	transcription start site region 9933	136 bp upstream
Tssr14922	transcription start site region 14922	309 bp upstream
Tssr14923	transcription start site region 14923	257 bp upstream