rs32127297 SNP Detail

Summary

• ID
  rs32127297
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135937405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccccttgga agtcaagtga ccctgagacc
  atggaaaaca cagatatctg catcacaatt cataataaaa acaaaaatac agttatgaag
  tagtaaggag ataattttat ggctgggggg gtggtcacca caatataagg aactatatta
  M
  aggcattata tcacagcatt aagaaggtgt aaaccgctgA TCTAGATAGA ATTTGTTTTA
  ATTTAGCCAT TAGGCTCTAA GCTTTGTTAA GTCACACCAA GGTCAAGTGA GCTTGCTTAT
  TCACTCTTAT CAGCCACATT ATACTGGACT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45109737	mCV27553415	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss145550662	ENSMUSSNP3614496	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
ss319994330	CHEV_1_137906244	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32127297					SNP	C	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135937405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	1771 bp distal
Rr12652	regulatory region 12652	396 bp proximal
Rr19440	regulatory region 19440	within coordinates
Rr28609	regulatory region 28609	804 bp distal
Rr30723	regulatory region 30723	797 bp proximal
Rr372097	regulatory region 372097	15 bp downstream
Tmem9	transmembrane protein 9	within coordinates