rs32129175 SNP Detail

Summary

• ID
  rs32129175
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141390174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGTTTTGGT TTTCTTGTTT GTTTGTTTTT TCTTCAAGAT ACAGTCTCAC TATGTAGCTC
  TGGCTGTCCT GGAACTCACT ATGTAGACCA GGCTGGCCTC ACACTCATAG AAACCCACCT
  GACTCTGCCT CTCAAATGCT GGGATCAAAG GCATGTGCCT CTATGCACAA AGAACCCTAA
  AGGAGGCAGG CGGTGTGGTA CTCATCTTTA AGGCCAGCAC TCTGGAGGGA GAGTTTGAGG
  TTAGCCTTGT CTGTATAGTG AGACTGTTAG AGAAAAGAAA AGAAAAGAAA AGAAAAGAAA
  M
  GAAAAGAAAA GAAAAGCAAG AAAGAAGAGG GCCAGAGAAA TGCTTCAGTG GGTGAAGGCA
  TTGCTGCCAA AACTTACACA TTGAGTTTGA GTACTGGAAT TAACAGGATA GGAGAGAATC
  AATTCTCAAA AGTTGACCTC TGACCTCCAC TCTCCCATTT ACATACGGAC ACACACACAG
  CTCCTAAAGT ATAGTTACAC ACACACACAC ACACACACAC ACAGAAAAAG CATGAAGGCA
  GGCTAGTCAA TCTTCCCCAC TCCTCTATTT TTCGGTTTCA CTATGTAGTC CAGGCTAGCT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45611203	mCV24075428	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32129175					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141390174 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15240	CpG island 15240			321 bp proximal
Gm54266	predicted gene, 54266			1232 bp upstream
Gm70264	predicted gene, 70264			1825 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2			Intron
				Noncoding-Transcript-Variant
Rr603850	regulatory region 603850			742 bp proximal
Rr603851	regulatory region 603851			1245 bp proximal
Rr603852	regulatory region 603852			1345 bp proximal
Tssr40091	transcription start site region 40091			1324 bp upstream
Tssr40092	transcription start site region 40092			1378 bp upstream
Tssr44355	transcription start site region 44355			1136 bp downstream
Tssr44356	transcription start site region 44356			1200 bp downstream