rs32132472 SNP Detail

Summary

• ID
  rs32132472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:53041242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATACTGG AGAGACTGAA
  GGGCTTGCCA GTGGACAGGA GAAGGCAGAA TGCATTGTGA AGTCATTTAT AACAGCATTT
  CTTGGAAACC CGTCTCTAAG AATAAGAGAT AGGAACGGCA TTTTAGGCAG TGATTTCTGC
  ATGCTTTGCG CTTGTCATGC CATCAAAAAC AGTATAGCAG CCAAAGTGCA AAGCTCTCCG
  Y
  GGAAGGAATG CCTTGGATCA TTCACTATTC CATTTACTAA ACCACCCAGT AGTGTGTCGG
  AAGCTTATCT ATCGTTTATT CTTCGTTGGG TTCCTATTAC AACGGTCTCA AGAACTATCT
  GTATTTCTTA CTGTGATCCC GAATCAAGGT TTATGTATAC TATCTCAACA GCCTCGTCAC
  CAATTTTTAA ATTATCTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49316557	NES12754170	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32132472					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49316557	NES12754170	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:53041242 () rs orientation: forward

Symbol	Name	Function Class
Rr537758	regulatory region 537758	within coordinates
Rr537759	regulatory region 537759	968 bp proximal
Sncaip	synuclein, alpha interacting protein (synphilin)	within coordinates
Tssr5316	transcription start site region 5316	1765 bp downstream