rs32134162 SNP Detail

Summary

• ID
  rs32134162
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:53038570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCACAA AAACTAAGAT
  GCCGAGCAAT TGAGAAAGAC ATGTAACAGC AATTCCTGGT CTCCATGTGC ACATTCATAC
  ACACATATAC AAATGCATAC ACAAATTAGA ATATATTACA TGTAGTATTT ATAGTATTCT
  TTTTTCATTT AAGACTAGTA AAGAATAATA TACATACACA AATATTAGAC AATTTTTGGT
  M
  TGTCCATAGG TATTCAAGTA AAATGGCTTT AATAGTTGCC ATTGCAGGAG TGATTGAAAT
  TCCTTCATTC TTATTGATGA GCTCTTAATT TCTTCGCGGC TTGTCACAAA TGTGAACAGT
  AACTGTCCTT TTCAATACTT TTGATTGCTT CCTTGGGAAA CTCTCTGAAC CATGAGGATG
  GAGACTAAAC ACATCTTAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49316577	NES12754142	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32134162					SNP	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49316577	NES12754142	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:53038570 () rs orientation: forward

Symbol	Name	Function Class
Sncaip	synuclein, alpha interacting protein (synphilin)	within coordinates
Tssr5316	transcription start site region 5316	904 bp upstream