rs32134274 SNP Detail

Summary

• ID
  rs32134274
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114962564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA TATGGGTGCA GTGCCTGTGG
  W
  GGTCACTAGA GGGTGCTGTG TATCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321653560	CHEV_5_115274512	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32134274					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114962564 () rs orientation: forward

Symbol	Name	Function Class
2610524H06Rik	RIKEN cDNA 2610524H06 gene	1035 bp upstream
Cpgi16338	CpG island 16338	838 bp distal
Cpgi16339	CpG island 16339	1786 bp proximal
Gm46920	predicted gene, 46920	within coordinates
Gm57857	predicted gene, 57857	1035 bp upstream
Gm72061	predicted gene, 72061	within coordinates
Gm72071	predicted gene, 72071	within coordinates
Gm72099	predicted gene, 72099	1020 bp downstream
Rr108236	regulatory region 108236	37 bp proximal
Rr124118	regulatory region 124118	within coordinates
Rr124119	regulatory region 124119	1436 bp proximal
Rr378493	regulatory region 378493	1299 bp downstream
Rr399275	regulatory region 399275	1794 bp upstream
Tssr52734	transcription start site region 52734	1046 bp upstream
Tssr52735	transcription start site region 52735	1028 bp upstream
Tssr52736	transcription start site region 52736	1014 bp upstream
Tssr52737	transcription start site region 52737	1829 bp downstream