rs32135016 SNP Detail

Summary

• ID
  rs32135016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:53037700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGGAAA CTGTACCAAT
  ACTGCATTCA AAAAAAAAAA AAAAACTCAC TCCTGTAGAA TAAGAGTTAA TTTGCTTTAA
  TCCCTGAATT TGAAAGGCTG AGCCAGAAGG TGGTCTGTGA GTTCAAGGCC AGGCCCCTCT
  AAATGGTAAG CCCTAGGCCA CACAAGGTGA CAGAGTAAGA CCCTGCCTCA AAAACTAAAC
  R
  TCTGACTAAA ACAGAGTCAA GTTGATTAAC TAATACCAAT TTCTATAATA ATTAGTATAT
  ATTTTCTAAA TGATTTTTCT TCCTGTAGCT TTGACCTTCA ACCTATTTTC TTAACTTTAA
  AGCACATTCT GTTACATATA CTCCAATGTC CCGAGGAAAT GGCTGTTACT GTGCATTAAT
  GGTCCCTTTT TGTAAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss49316581	NES12754231	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs32135016					SNP	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49316581	NES12754231	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:53037700 () rs orientation: forward

Symbol	Name	Function Class
Sncaip	synuclein, alpha interacting protein (synphilin)	within coordinates
Tssr5316	transcription start site region 5316	1774 bp upstream