rs32135717 SNP Detail

Summary

• ID
  rs32135717
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150882254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG TCCCCTGGAA GACTAGTAAG
  Y
  ACTCATAACT GCTGAGCCAT CTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45611347	mCV24824482	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss148058221	ENSMUSSNP3621080	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321430186	CHEV_4_150171906	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs32135717					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150882254 () rs orientation: forward

Symbol	Name	Function Class
Gm36806	predicted gene, 36806	within coordinates
Gm69570	predicted gene, 69570	within coordinates
Gm69574	predicted gene, 69574	625 bp upstream
Gm69578	predicted gene, 69578	1334 bp downstream
Mir12196	microRNA 12196	101 bp downstream
Rr398884	regulatory region 398884	1000 bp upstream
Rr398885	regulatory region 398885	1785 bp upstream
Rr605416	regulatory region 605416	1106 bp proximal
Rr605417	regulatory region 605417	1647 bp proximal
Rr605418	regulatory region 605418	1910 bp proximal
Tssr1385	transcription start site region 1385	158 bp downstream
Tssr1386	transcription start site region 1386	1794 bp downstream