rs32135989 SNP Detail

Summary

• ID
  rs32135989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176540954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTTGCC TCTGTCTCCC
  AAGTTCTGGA ATTAAAGGTG TGCACCACCA CTGCCAGCCA GAGCGTATTT TTAAAGGGTT
  TCTTATAGAA GAAAAAAATG GAACACTCTT CAGATATAAT GATTCAAAAC AAGATCTTGT
  CATTATGTGT TTGTAGACAT TGGTTTATAG TCATAGTAAT TAATGAAAAT AACTAAAAAT
  Y
  TCAAACTTTT CAGATGGAGA ATACTATCTA AATTTTTGTG TTTTATTTTA GTTATAAAAA
  TATCAAAAAA TTGTAGCTTG TATATATCAA TGACTTTACT TAGCATCAGA GCTTTGGGTA
  TATTTGTATA TGTGTATTTT AGAGGTTGAC TTGTAATTAA AGATACTTTC AGATTAAGCA
  GATTTAACAT GGAAACCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45110904	mCV25116238	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T	T
ss46702085	NES10690847	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T	C		T	T	T		C	T	C		C
ss146339989	ENSMUSSNP5546240	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320157473	CHEV_1_178643519	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32135989					SNP	C	C	T	T	C	T	C	T	T	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702085	NES10690847	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176540954 () rs orientation: forward

Symbol	Name	Function Class
Rr396622	regulatory region 396622	522 bp downstream
Rr423899	regulatory region 423899	505 bp distal
Rr423900	regulatory region 423900	791 bp distal