rs32136523 SNP Detail

Summary

• ID
  rs32136523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172525504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAG AATGATTTTT TTTTTGCTTC
  Y
  CTTTCTCCCA GTGGTCTGAC GTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45110667	mCV24592111	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss146199164	ENSMUSSNP249713	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320126979	CHEV_1_174628068	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32136523					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172525504 () rs orientation: forward

Symbol	Name	Function Class
Crp	C-reactive protein, pentraxin-related	119 bp upstream
D1Mit149	DNA segment, Chr 1, Massachusetts Institute of Technology 149	1292 bp proximal
D1Mit149.1	DNA segment, Chr 1, Massachusetts Institute of Technology 149.1	1140 bp proximal
Rr423653	regulatory region 423653	165 bp distal
Rr423654	regulatory region 423654	within coordinates
Tssr10246	transcription start site region 10246	109 bp upstream
Tssr10247	transcription start site region 10247	1052 bp upstream
Tssr10248	transcription start site region 10248	1118 bp upstream
Tssr10249	transcription start site region 10249	1142 bp upstream
Tssr10250	transcription start site region 10250	1197 bp upstream
Tssr10251	transcription start site region 10251	1253 bp upstream
Tssr10252	transcription start site region 10252	1319 bp upstream
Tssr10253	transcription start site region 10253	1368 bp upstream
Tssr10254	transcription start site region 10254	1433 bp upstream