rs32136800 SNP Detail

Summary

• ID
  rs32136800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115050375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTT TCAGGTGCCC CTAACCCACA
  Y
  ATTATTCTCT GGAGATGCCC CCAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149118856	ENSMUSSNP7165474	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321653769	CHEV_5_115362323	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs32136800					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115050375 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	80 bp downstream
Tssr48139	transcription start site region 48139	1292 bp downstream
Tssr48140	transcription start site region 48140	1258 bp downstream
Tssr48141	transcription start site region 48141	1041 bp downstream
Tssr48142	transcription start site region 48142	951 bp downstream
Tssr48143	transcription start site region 48143	908 bp downstream
Tssr48144	transcription start site region 48144	868 bp downstream
Tssr48145	transcription start site region 48145	801 bp downstream
Tssr48146	transcription start site region 48146	735 bp downstream
Tssr48147	transcription start site region 48147	720 bp downstream
Tssr48148	transcription start site region 48148	654 bp downstream
Tssr48149	transcription start site region 48149	634 bp downstream
Tssr48150	transcription start site region 48150	621 bp downstream
Tssr48151	transcription start site region 48151	579 bp downstream
Tssr48152	transcription start site region 48152	521 bp downstream
Tssr48153	transcription start site region 48153	431 bp downstream
Tssr48154	transcription start site region 48154	415 bp downstream
Tssr52739	transcription start site region 52739	1311 bp upstream