rs32138889 SNP Detail

Summary

• ID
  rs32138889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100974769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAG ACCGGCACCC CCTTGCACCC
  Y
  GTTACGGCTG TCCCAGGGGG GGGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39367247	mCV23103721	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss148482178	ENSMUSSNP3119	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32138889					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100974769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7765	CpG island 7765	578 bp proximal
Fignl2	fidgetin-like 2	within coordinates
Gm53912	predicted gene, 53912	within coordinates
Gm62031	predicted gene, 62031	990 bp upstream
Rr509897	regulatory region 509897	501 bp distal
Rr509898	regulatory region 509898	500 bp proximal
Rr509899	regulatory region 509899	1001 bp proximal
Rr509900	regulatory region 509900	1669 bp proximal
Tssr133183	transcription start site region 133183	993 bp upstream
Tssr136514	transcription start site region 136514	1481 bp downstream
Tssr136515	transcription start site region 136515	1522 bp downstream
Tssr136516	transcription start site region 136516	1601 bp downstream
Tssr136517	transcription start site region 136517	1919 bp downstream
Tssr136518	transcription start site region 136518	1994 bp downstream