rs32138992 SNP Detail

Summary

• ID
  rs32138992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115284303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGCTGCC ACCTCAGTAC CCTAGGGCTA GCCTAAGTCA
  CAGAGAACAC AGAAGACAGT TCTCAAATGA CCAAGTGCTG GCCTGGAGTC ACCATTAGGA
  R
  CCAGTCAAGA CATGGCCCCA GAGCTACTTA CTTGTCGCAC AGCTCAGATA TCTGATAAGG
  CAAACTTAAA ATTCAAACAC ATTCAGAAAT AAGGGCCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45759153	mCV23012861	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss149121408	ENSMUSSNP3210192	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss321654342	CHEV_5_115596253	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs32138992					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115284303 () rs orientation: forward

Symbol	Name	Function Class
Mlec	malectin	within coordinates
Rr618145	regulatory region 618145	331 bp distal
Rr618146	regulatory region 618146	1149 bp proximal
Tssr48205	transcription start site region 48205	1458 bp upstream
Tssr52756	transcription start site region 52756	1597 bp downstream
Tssr52757	transcription start site region 52757	1762 bp downstream
Tssr52758	transcription start site region 52758	1811 bp downstream